:orphan:



.. _sphx_glr_examples_gallery:

Examples
========



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows a *ball-and-stick* model of the beta-lactam antibiotic ampicillin.">

.. only:: html

 .. figure:: /examples/gallery/images/thumb/sphx_glr_ball_and_stick_thumb.png
     :alt: Ampicillin as ball-and-stick model

     :ref:`sphx_glr_examples_gallery_ball_and_stick.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/ball_and_stick

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In this example the entire biological assembly of a clathrin D6 coat is loaded from a *mmCIF* f...">

.. only:: html

 .. figure:: /examples/gallery/images/thumb/sphx_glr_assembly_thumb.png
     :alt: Assembly of a clathrin D6 coat

     :ref:`sphx_glr_examples_gallery_assembly.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/assembly

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In this example the flexbility of CA atoms in protein structure is displayed: The more flexible...">

.. only:: html

 .. figure:: /examples/gallery/images/thumb/sphx_glr_flexibility_thumb.png
     :alt: Flexible sites in a protein structure

     :ref:`sphx_glr_examples_gallery_flexibility.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/flexibility

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example reproduces a figure from the publication *&quot;StreAM-Tg: algorithms for analyzing coa...">

.. only:: html

 .. figure:: /examples/gallery/images/thumb/sphx_glr_nucleotide_contacts_thumb.png
     :alt: Contacts between nucleotides in a tetracycline aptamer

     :ref:`sphx_glr_examples_gallery_nucleotide_contacts.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/nucleotide_contacts

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows the extension of the C-linker &#x27;*disc*&#x27; of the HCN4 ion channel upon binding ...">

.. only:: html

 .. figure:: /examples/gallery/images/thumb/sphx_glr_displacement_thumb.png
     :alt: Displacement between HCN4 C-linker in apo and holo conformation

     :ref:`sphx_glr_examples_gallery_displacement.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/displacement

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This examples highlights the histidine residue of cytochrome C that binds to its heme ligand.">

.. only:: html

 .. figure:: /examples/gallery/images/thumb/sphx_glr_heme_complex_thumb.png
     :alt: Heme bound to cytochrome C

     :ref:`sphx_glr_examples_gallery_heme_complex.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/heme_complex

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Hydrogen bonds between biotin and streptavidin">

.. only:: html

 .. figure:: /examples/gallery/images/thumb/sphx_glr_hydrogen_bonds_thumb.png
     :alt: Hydrogen bonds between biotin and streptavidin

     :ref:`sphx_glr_examples_gallery_hydrogen_bonds.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/hydrogen_bonds
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_