Ammolite - From Biotite to PyMOL and back again¶
This package enables the transfer of structure related objects from Biotite to PyMOL for visualization, via PyMOL’s Python API:
Import
AtomArray
andAtomArrayStack
objects into PyMOL - without intermediate structure files.Convert PyMOL objects into
AtomArray
andAtomArrayStack
instances.Use Biotite’s boolean masks for atom selection in PyMOL.
Display images rendered with PyMOL in Jupyter notebooks.